C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB, member RAS oncogene family-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172053 Rabl2-006 ENSMUSG00000022621 10090 - 15:89583041-89590399 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000172053
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000172053 18.144±0.00 11.763±0.00 10.465±1.19 29.240±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066R CIL_00066R_0002 CGP 15:89568326-89591923

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IDA GTP binding
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007338 IMP single fertilization
GO:0030317 IMP sperm motility
GO:0030992 IDA intraciliary transport particle B
GO:0042384 IMP cilium assembly
GO:0097225 IDA sperm midpiece

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354869 RABL2B-007 protein_coding Homo_sapiens 0 327
ENST00000376439 RABL2A-201 protein_coding Homo_sapiens 0 270
ENST00000393165 RABL2A-003 protein_coding Homo_sapiens 0 333
ENST00000393166 RABL2A-001 protein_coding Homo_sapiens 0 333
ENST00000393167 RABL2A-002 protein_coding Homo_sapiens 0 333
ENST00000395590 RABL2B-004 protein_coding Homo_sapiens 0 327
ENST00000395591 RABL2B-003 protein_coding Homo_sapiens 0 270
ENST00000395593 RABL2B-008 protein_coding Homo_sapiens 0 327
ENST00000395595 RABL2B-006 protein_coding Homo_sapiens 0 327
ENST00000395598 RABL2B-001 protein_coding Homo_sapiens 0 327
ENST00000409121 RABL2A-014 retained_intron Homo_sapiens 0 333
ENST00000409842 RABL2A-008 protein_coding Homo_sapiens 0 270
ENST00000409875 RABL2A-013 protein_coding Homo_sapiens 0 333
ENST00000413545 RABL2A-004 protein_coding Homo_sapiens 0 333
ENST00000425098 RABL2B-009 nonsense_mediated_decay Homo_sapiens 0 595
ENST00000435118 RABL2B-201 protein_coding Homo_sapiens 0 327
ENST00000436958 RABL2B-002 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000450954 RABL2A-009 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000452831 RABL2A-011 nonsense_mediated_decay Homo_sapiens 0 580
ENST00000464678 RABL2B-012 retained_intron Homo_sapiens 0 327
ENST00000464740 RABL2B-015 retained_intron Homo_sapiens 2e-27 126
ENST00000465063 RABL2B-010 processed_transcript Homo_sapiens 0 270
ENST00000465711 RABL2A-021 processed_transcript Homo_sapiens 0 333
ENST00000467600 RABL2A-020 retained_intron Homo_sapiens 0 237
ENST00000468451 RABL2B-014 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000476236 RABL2A-015 retained_intron Homo_sapiens 4e-27 126
ENST00000477218 RABL2A-005 processed_transcript Homo_sapiens 5e-24 115
ENST00000478880 RABL2A-016 processed_transcript Homo_sapiens 0 274
ENST00000482308 RABL2B-013 retained_intron Homo_sapiens 9e-21 104
ENST00000486403 RABL2A-018 retained_intron Homo_sapiens 0 270
ENST00000493876 RABL2A-022 retained_intron Homo_sapiens 0 219
ENST00000494909 RABL2A-017 retained_intron Homo_sapiens 3e-27 128

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