C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2 pseudogene 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437531 HMGN2P20-001 ENSG00000232963 9606 + 2:24330402-24330674 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastMuscleOvaryTestisENST00000437531
Transcript ID Adrenal Breast Muscle Ovary Testis
ENST00000437531 0.069±0.00 0.071±0.00 0.066±0.00 0.353±0.00 0.073±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000024 CIL_000024_0002 CGP 2:24175069-24360714

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 344
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 344
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 344
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 344
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 333
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 326
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 326
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 326
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 324
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 324
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 289
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 289
ENSMUST00000188317 RP24-447G12.2-001 protein_coding Mus_musculus 0 268
ENSMUST00000184601 Gm10105-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000097278 Gm6594-201 protein_coding Mus_musculus 0 257
ENSMUST00000165525 Gm16494-201 protein_coding Mus_musculus 0 252
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000177675 Gm20379-201 processed_pseudogene Mus_musculus 0 239
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 0 233
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 3.00018e-42 174

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