C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442006 RP11-334L9.1-001 ENSG00000215895 9606 + 1:38708931-38710890 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000442006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000442006 0.006±0.00 0.054±0.00 0.042±0.00 0.027±0.00 0.020±0.00 0.050±0.00 0.018±0.00 0.210±0.00 0.043±0.00 0.038±0.00 0.023±0.00 0.069±0.03 0.061±0.04 0.051±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PZ CIL_0008PZ_0001 VISTA 1:38426937-39028462
CIL_0008G7 CIL_0008G7_0001 VISTA 1:38483085-39084457
CIL_0007Q3 CIL_0007Q3_0001 VISTA 1:38525828-39126769

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100171 Hspa5-001 protein_coding Mus_musculus 0 2270
ENSMUST00000028222 Hspa5-002 protein_coding Mus_musculus 0 2270
ENSMUST00000155595 Hspa5-007 processed_transcript Mus_musculus 0 534
ENSMUST00000129333 Hspa5-008 processed_transcript Mus_musculus 0 294
ENSMUST00000145466 Hspa5-006 processed_transcript Mus_musculus 0 233

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