C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: farnesyl-diphosphate farnesyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443614 FDFT1-002 ENSG00000079459 9606 + 8:11802739-11838783 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000443614
Transcript ID Adipose Adrenal Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000443614 15.526±0.00 13.689±0.00 21.474±0.00 9.909±0.00 1.482±0.00 2.674±0.00 30.112±0.00 21.152±0.00 13.573±0.85 21.161±4.18 42.548±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Y4 CIL_0008Y4_0001 VISTA 8:11271783-11873892
CIL_000919 CIL_000919_0001 VISTA 8:11446673-12047186
CIL_0007PQ CIL_0007PQ_0001 VISTA 8:11649159-12249913

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004310 TAS:IEA farnesyl-diphosphate farnesyltransferase activity
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006694 TAS steroid biosynthetic process
GO:0006695 TAS cholesterol biosynthetic process
GO:0008299 IEA isoprenoid biosynthetic process
GO:0008610 IEA lipid biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0016740 IEA transferase activity
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0051996 IEA squalene synthase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054963 Fdft1-201 protein_coding Mus_musculus 0 822
ENSMUST00000038304 Gm6781-201 processed_pseudogene Mus_musculus 0 569

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