C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35 pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446039 RPL35P4-001 ENSG00000213783 9606 - 7:27269357-27269678 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleTestisENST00000446039
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Testis
ENST00000446039 0.065±0.00 0.213±0.00 0.076±0.00 0.075±0.00 0.206±0.00 0.131±0.00 0.074±0.00 0.255±0.00 0.127±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003P6 CIL_0003P6_0001 CGP 7:27242700-27662995

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134694 Itgam-010 protein_coding Mus_musculus 0 215
ENSMUST00000098015 Itgam-001 protein_coding Mus_musculus 0 215
ENSMUST00000120817 Gm7212-001 processed_pseudogene Mus_musculus 0 200

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