C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446176 FNBP1-002 ENSG00000187239 9606 - 9:129887187-130043162 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverOvaryPlacentaTestisENST00000446176
Transcript ID Brain Breast Colon Liver Ovary Placenta Testis
ENST00000446176 12.240±0.00 2.312±0.06 15.293±0.00 6.226±0.00 3.101±2.41 3.267±0.00 2.460±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FN CIL_0006FN_0001 CGP 9:129834698-130043194
CIL_0005U8 CIL_0005U8_0001 CGP 9:129887187-130140169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005764 IEA lysosome
GO:0005840 IEA ribosome
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005905 IEA coated pit
GO:0006412 IEA translation
GO:0006897 IEA endocytosis
GO:0007165 IEA signal transduction
GO:0008289 IEA lipid binding
GO:0031410 IEA cytoplasmic vesicle
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113560 Fnbp1-001 protein_coding Mus_musculus 0 1999
ENSMUST00000100208 Fnbp1-006 protein_coding Mus_musculus 0 1869
ENSMUST00000113559 Fnbp1-201 protein_coding Mus_musculus 0 1415
ENSMUST00000138581 Fnbp1-012 processed_transcript Mus_musculus 0 1415
ENSMUST00000113552 Fnbp1-002 protein_coding Mus_musculus 0 1024
ENSMUST00000113564 Fnbp1-203 protein_coding Mus_musculus 0 1024
ENSMUST00000113562 Fnbp1-202 protein_coding Mus_musculus 0 1024
ENSMUST00000100207 Fnbp1-004 protein_coding Mus_musculus 0 1000
ENSMUST00000075326 Fnbp1-007 protein_coding Mus_musculus 0 994
ENSMUST00000113555 Fnbp1-005 protein_coding Mus_musculus 0 994
ENSMUST00000073879 Fnbp1-003 protein_coding Mus_musculus 0 994
ENSMUST00000149196 Fnbp1-010 protein_coding Mus_musculus 0 577
ENSMUST00000128431 Fnbp1-013 processed_transcript Mus_musculus 0 259
ENSMUST00000136181 Fnbp1-009 protein_coding Mus_musculus 6e-37 161

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