C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nuclear cap binding protein subunit 2, 20kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447325 NCBP2-007 ENSG00000114503 9606 - 3:196935406-196942377 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000447325
Transcript ID Muscle
ENST00000447325 1.162±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070W CIL_00070W_0002 CGP 3:196867856-196942597

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000339 IEA RNA cap binding
GO:0003676 IEA nucleic acid binding
GO:0005846 IEA nuclear cap binding complex
GO:0045292 IEA mRNA cis splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023460 Ncbp2-001 protein_coding Mus_musculus 0 532
ENSMUST00000126215 Ncbp2-004 processed_transcript Mus_musculus 0 429
ENSMUST00000140965 Ncbp2-003 retained_intron Mus_musculus 0 429
ENSMUST00000118145 Gm12700-001 processed_pseudogene Mus_musculus 0 374

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