C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear cap binding protein subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023460 Ncbp2-001 ENSMUSG00000022774 10090 + 16:31948513-31958472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023460
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023460 11.439±2.74 29.625±0.81 31.767±1.04 6.792±0.90 2.210±0.00 5.686±0.32 8.696±0.75 12.475±8.36 10.372±2.38 4.613±0.89 14.479±5.89 17.787±6.05 10.817±0.49

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 ISS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000340 ISS RNA 7-methylguanosine cap binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0005845 ISS mRNA cap binding complex
GO:0005846 IEA nuclear cap binding complex
GO:0006370 ISS 7-methylguanosine mRNA capping
GO:0006408 ISS snRNA export from nucleus
GO:0006446 ISS regulation of translational initiation
GO:0008380 ISS RNA splicing
GO:0031047 IEA gene silencing by RNA
GO:0044822 IEA poly(A) RNA binding
GO:0045292 ISS mRNA cis splicing, via spliceosome
GO:0046833 ISS positive regulation of RNA export from nucleus
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321256 NCBP2-001 protein_coding Homo_sapiens 0 645
ENST00000411704 NCBP2-010 protein_coding Homo_sapiens 0 514
ENST00000422610 NCBP2-011 protein_coding Homo_sapiens 0 532
ENST00000427641 NCBP2-004 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000428425 NCBP2-005 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000447325 NCBP2-007 protein_coding Homo_sapiens 0 532
ENST00000452404 NCBP2-006 protein_coding Homo_sapiens 0 532
ENST00000455953 NCBP2-012 protein_coding Homo_sapiens 0 272
ENST00000463783 NCBP2-002 retained_intron Homo_sapiens 0 390
ENST00000468923 NCBP2-008 retained_intron Homo_sapiens 0 545
ENST00000479647 NCBP2-013 retained_intron Homo_sapiens 0 433
ENST00000482976 NCBP2-009 retained_intron Homo_sapiens 0 278

Loading