C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxisome proliferator-activated receptor delta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448077 PPARD-203 ENSG00000112033 9606 + 6:35342558-35428191 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000448077
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000448077 3.558±0.00 0.545±0.00 1.316±0.00 3.270±0.00 1.196±0.00 2.021±1.59 1.745±0.00 1.318±0.00 1.796±0.09 5.637±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0001 VISTA 6:35189352-35792826
CIL_0004LU CIL_0004LU_0002 CGP 6:35297852-35428191
CIL_0002EQ CIL_0002EQ_0001 CGP 6:35342558-35467103

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003677 ISS DNA binding
GO:0003700 NAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006006 NAS glucose metabolic process
GO:0006091 TAS generation of precursor metabolites and energy
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006629 ISS lipid metabolic process
GO:0006635 ISS fatty acid beta-oxidation
GO:0007566 TAS embryo implantation
GO:0008144 IDA drug binding
GO:0008203 TAS cholesterol metabolic process
GO:0008270 IEA zinc ion binding
GO:0008283 ISS cell proliferation
GO:0008289 IDA lipid binding
GO:0008366 ISS axon ensheathment
GO:0009062 TAS fatty acid catabolic process
GO:0010467 TAS gene expression
GO:0015758 NAS glucose transport
GO:0015908 ISS fatty acid transport
GO:0030522 IEA intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045600 NAS positive regulation of fat cell differentiation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046697 TAS decidualization
GO:0070539 IDA linoleic acid binding
GO:0097190 IMP apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166744 Ppard-004 processed_transcript Mus_musculus 0 1670
ENSMUST00000002320 Ppard-001 protein_coding Mus_musculus 0 1559
ENSMUST00000142226 Ppard-003 retained_intron Mus_musculus 0 911
ENSMUST00000169040 Ppard-005 protein_coding Mus_musculus 0 830
ENSDART00000128783 ppardb-201 protein_coding Danio_rerio 0 518
ENSDART00000132584 ppardb-001 protein_coding Danio_rerio 0 518
ENSMUST00000123020 Ppard-002 retained_intron Mus_musculus 3.99931e-42 178

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