C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449897 AC140076.1-001 ENSG00000227309 9606 + 3:17465150-17465510 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverPlacentaTestisENST00000449897
Transcript ID Breast Colon Kidney Liver Placenta Testis
ENST00000449897 0.574±0.45 0.157±0.00 0.199±0.00 0.620±0.00 0.069±0.00 0.280±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HQ CIL_0004HQ_0001 CGP 3:17157162-18445588
CIL_0008ZJ CIL_0008ZJ_0001 VISTA 3:17267063-17867995
CIL_0007OK CIL_0007OK_0001 UCNEbase 3:17286171-18992888

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000181130 Rpl31-ps16-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000118086 Rpl31-ps5-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000191416 RP23-416O18.2-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000181182 Rpl31-ps21-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000120312 Gm12304-001 processed_pseudogene Mus_musculus 8e-40 167

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