C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L31, pseudogene 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181130 Rpl31-ps16-001 ENSMUSG00000097803 10090 + 17:85498633-85499008 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000181130
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000181130 0.653±0.28 1.619±1.43 0.506±0.43 0.482±0.03 0.494±0.13 0.417±0.26 0.229±0.09 1.838±1.98 0.220±0.04 0.985±0.37 0.177±0.05 0.141±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NM CIL_0001NM_0002 CGP 17:85090726-85629302
CIL_0007KD CIL_0007KD_0002 UCNEbase 17:85172000-86036297
CIL_00083B CIL_00083B_0002 VISTA 17:85187468-85789670
CIL_0009CD CIL_0009CD_0002 VISTA 17:85226742-85830634
CIL_0009CC CIL_0009CC_0002 VISTA 17:85262619-85863333
CIL_0007WX CIL_0007WX_0002 VISTA 17:85278835-85879978

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000075402 rpl31-201 protein_coding Danio_rerio 0 254
ENSDART00000149851 rpl31-002 protein_coding Danio_rerio 0 254
ENSDART00000149554 rpl31-001 protein_coding Danio_rerio 0 254
ENSDART00000148688 rpl31-003 retained_intron Danio_rerio 0 231
ENSDART00000148984 rpl31-004 retained_intron Danio_rerio 2e-21 106
ENST00000264258 RPL31-001 protein_coding Homo_sapiens 0 492
ENST00000406329 RPL31P28-001 processed_pseudogene Homo_sapiens 0 300
ENST00000409000 RPL31-006 protein_coding Homo_sapiens 0 355
ENST00000409028 RPL31-007 protein_coding Homo_sapiens 0 438
ENST00000409038 RPL31-008 protein_coding Homo_sapiens 0 440
ENST00000409320 RPL31-002 protein_coding Homo_sapiens 0 438
ENST00000409650 RPL31-009 protein_coding Homo_sapiens 0 442
ENST00000409711 RPL31-004 protein_coding Homo_sapiens 0 355
ENST00000409733 RPL31-010 protein_coding Homo_sapiens 0 492
ENST00000414975 RP11-681L4.1-001 processed_pseudogene Homo_sapiens 0 243
ENST00000419276 RPL31-003 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000422565 RPL31P63-001 processed_pseudogene Homo_sapiens 0 442
ENST00000426558 RPL31P11-002 processed_transcript Homo_sapiens 0 409
ENST00000427776 RP11-458F8.3-001 processed_pseudogene Homo_sapiens 0 327
ENST00000431058 RPL31P35-001 processed_pseudogene Homo_sapiens 0 401
ENST00000431088 AC016712.2-001 processed_pseudogene Homo_sapiens 0 448
ENST00000434369 AC069213.4-001 processed_pseudogene Homo_sapiens 0 226
ENST00000441435 RPL31-011 protein_coding Homo_sapiens 0 375
ENST00000441577 RP11-560I19.2-001 processed_pseudogene Homo_sapiens 0 372
ENST00000447680 RP11-346D6.4-001 processed_pseudogene Homo_sapiens 0 385
ENST00000449702 AC104306.1-001 processed_pseudogene Homo_sapiens 0 357
ENST00000449897 AC140076.1-001 processed_pseudogene Homo_sapiens 0 291
ENST00000454082 RPL31P11-001 transcribed_processed_pseudogene Homo_sapiens 0 409
ENST00000455434 RP11-420H19.3-001 processed_pseudogene Homo_sapiens 0 350
ENST00000456292 RPL31-005 protein_coding Homo_sapiens 0 438
ENST00000462248 RP11-147I3.1-001 transcribed_processed_pseudogene Homo_sapiens 0 381
ENST00000480540 RP11-112J1.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000487111 RP11-147I3.1-003 processed_transcript Homo_sapiens 0 270
ENST00000490759 RPL31P49-001 processed_pseudogene Homo_sapiens 0 411
ENST00000496160 RPL31P61-001 processed_pseudogene Homo_sapiens 0 416
ENST00000498412 RP1-102E24.1-001 processed_pseudogene Homo_sapiens 0 435
ENST00000518463 RP11-267M23.6-001 processed_pseudogene Homo_sapiens 0 322
ENST00000525104 RP11-147I3.1-002 processed_transcript Homo_sapiens 0 381
ENST00000529570 RP11-147I3.1-004 processed_transcript Homo_sapiens 0 381

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