C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: INO80B-WBP1 readthrough (NMD candidate)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452361 INO80B-WBP1-001 ENSG00000274049 9606 + 2:74455088-74460884 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000452361
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000452361 18.129±0.00 0.540±0.00 9.085±1.94 8.123±0.00 6.927±4.89 4.913±0.00 6.143±4.87 4.497±3.72 19.302±0.00 2.793±1.70 5.944±4.65 5.410±0.00 14.924±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0031011 IEA:IDA Ino80 complex
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113935 Ino80b-001 protein_coding Mus_musculus 0 1075
ENSMUST00000032109 Ino80b-201 protein_coding Mus_musculus 0 1005
ENSMUST00000113936 Wbp1-002 protein_coding Mus_musculus 0 941
ENSMUST00000032111 Wbp1-001 protein_coding Mus_musculus 0 941
ENSMUST00000131939 Wbp1-004 retained_intron Mus_musculus 0 939
ENSMUST00000146328 Wbp1-008 protein_coding Mus_musculus 0 830
ENSMUST00000143814 Ino80b-002 nonsense_mediated_decay Mus_musculus 0 795
ENSMUST00000151393 Wbp1-003 retained_intron Mus_musculus 0 527
ENSMUST00000131936 Wbp1-006 processed_transcript Mus_musculus 0 424
ENSMUST00000142493 Wbp1-007 retained_intron Mus_musculus 0 414
ENSMUST00000123394 Wbp1-005 processed_transcript Mus_musculus 0 257
ENSDART00000044214 wbp1lb-001 protein_coding Danio_rerio 0.00000000003 75

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