C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Shwachman-Bodian-Diamond syndrome pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453858 SBDSP1-001 ENSG00000225648 9606 + 7:72829656-72836701 transcribed_unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000453858
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000453858 4.195±0.00 10.442±0.00 2.947±0.00 9.109±2.97 10.375±0.95 4.298±2.20 2.450±0.87 4.015±2.93 3.370±0.02 9.058±3.14 2.874±2.17 5.681±2.10 2.789±0.30 4.323±1.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026387 Sbds-001 protein_coding Mus_musculus 0 797
ENSMUST00000139211 Sbds-002 nonsense_mediated_decay Mus_musculus 0 562
ENSMUST00000125625 Sbds-003 protein_coding Mus_musculus 0 501

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