C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Shwachman-Bodian-Diamond syndrome homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139211 Sbds-002 ENSMUSG00000025337 10090 - 5:130246405-130255405 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaTestisENSMUST00000139211
Transcript ID Brain Breast Ovary Placenta Testis
ENSMUST00000139211 42.611±0.00 7.039±0.00 25.106±13.84 50.618±8.36 62.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UR CIL_0005UR_0002 CGP 5:130219744-130255530
CIL_0005US CIL_0005US_0002 CGP 5:130245731-130341563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001833 IMP inner cell mass cell proliferation
GO:0003723 IBA RNA binding
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0006364 IBA rRNA processing
GO:0042273 IBA ribosomal large subunit biogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246868 SBDS-001 protein_coding Homo_sapiens 0 645
ENST00000414306 SBDS-005 nonsense_mediated_decay Homo_sapiens 0 599
ENST00000415772 SBDSP1-004 processed_transcript Homo_sapiens 0 196
ENST00000423945 SBDSP1-005 processed_transcript Homo_sapiens 0 196
ENST00000437201 SBDSP1-003 processed_transcript Homo_sapiens 0 499
ENST00000453858 SBDSP1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 562
ENST00000456312 SBDSP1-002 processed_transcript Homo_sapiens 0 501
ENST00000490953 SBDS-004 retained_intron Homo_sapiens 0 207
ENST00000491969 TYW1-009 processed_transcript Homo_sapiens 0 219
ENST00000617799 SBDS-201 protein_coding Homo_sapiens 0 647

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