C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Shwachman-Bodian-Diamond syndrome homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026387 Sbds-001 ENSMUSG00000025337 10090 - 5:130245731-130255530 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026387
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026387 14.755±4.10 16.894±8.89 30.971±2.72 16.418±7.03 7.949±1.61 23.446±2.17 8.444±1.10 15.766±3.84 18.671±8.37 19.939±2.91 10.489±1.24 13.623±11.60 27.884±11.87 30.024±8.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UR CIL_0005UR_0002 CGP 5:130219744-130255530
CIL_0005US CIL_0005US_0002 CGP 5:130245731-130341563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 ISS spindle pole
GO:0001833 IMP inner cell mass cell proliferation
GO:0003723 IBA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IBA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IBA cytoplasm
GO:0006364 IBA rRNA processing
GO:0008017 IEA microtubule binding
GO:0008283 ISS cell proliferation
GO:0019843 IEA rRNA binding
GO:0030282 IEA bone mineralization
GO:0030595 IEA leukocyte chemotaxis
GO:0042256 ISS mature ribosome assembly
GO:0042273 IBA ribosomal large subunit biogenesis
GO:0043022 ISS ribosome binding
GO:0043148 IEA mitotic spindle stabilization
GO:0044822 IEA poly(A) RNA binding
GO:0048539 IEA bone marrow development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246868 SBDS-001 protein_coding Homo_sapiens 0 924
ENST00000414306 SBDS-005 nonsense_mediated_decay Homo_sapiens 0 878
ENST00000415772 SBDSP1-004 processed_transcript Homo_sapiens 0 196
ENST00000423945 SBDSP1-005 processed_transcript Homo_sapiens 0 196
ENST00000437201 SBDSP1-003 processed_transcript Homo_sapiens 0 693
ENST00000453858 SBDSP1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 797
ENST00000456312 SBDSP1-002 processed_transcript Homo_sapiens 0 499
ENST00000490953 SBDS-004 retained_intron Homo_sapiens 0 736
ENST00000491969 TYW1-009 processed_transcript Homo_sapiens 0 207
ENST00000617799 SBDS-201 protein_coding Homo_sapiens 0 913

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