C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caprin family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454014 CAPRIN2-003 ENSG00000110888 9606 - 12:30709553-30754514 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungOvaryTestisENST00000454014
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Ovary Testis
ENST00000454014 1.043±0.00 0.557±0.00 0.942±0.00 0.450±0.00 1.057±0.00 0.741±0.00 0.542±0.00 0.777±0.00 2.891±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HS CIL_0006HS_0001 CGP 12:30628988-30754951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0003824 IEA catalytic activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005813 IDA centrosome
GO:0017148 IEA negative regulation of translation
GO:0030308 IDA negative regulation of cell growth
GO:0032092 IDA positive regulation of protein binding
GO:0033138 IDA positive regulation of peptidyl-serine phosphorylation
GO:0043235 IDA receptor complex
GO:0044237 IEA cellular metabolic process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050775 ISS positive regulation of dendrite morphogenesis
GO:0061003 ISS positive regulation of dendritic spine morphogenesis
GO:0090263 IDA positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111569 Caprin2-001 protein_coding Mus_musculus 0 2353
ENSMUST00000072324 Caprin2-003 protein_coding Mus_musculus 0 1895
ENSMUST00000139914 Caprin2-006 protein_coding Mus_musculus 0 608
ENSMUST00000127941 Caprin2-008 processed_transcript Mus_musculus 0 518
ENSMUST00000151640 Caprin2-007 processed_transcript Mus_musculus 0 363
ENSMUST00000154971 Caprin2-005 processed_transcript Mus_musculus 0 198

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