C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2-hydroxyacyl-CoA lyase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456194 HACL1-005 ENSG00000131373 9606 - 3:15560747-15601569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalHeartKidneyLiverOvaryPlacentaTestisENST00000456194
Transcript ID Adipose Adrenal Heart Kidney Liver Ovary Placenta Testis
ENST00000456194 4.038±0.00 3.718±0.00 1.872±0.00 9.362±0.00 4.732±0.00 1.278±0.37 3.748±0.13 5.830±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AM CIL_0005AM_0001 CGP 3:15450133-15601831
CIL_0005AL CIL_0005AL_0001 CGP 3:15560704-15645822

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0001561 IDA fatty acid alpha-oxidation
GO:0003824 IEA catalytic activity
GO:0005102 IPI receptor binding
GO:0005777 IDA peroxisome
GO:0005782 TAS peroxisomal matrix
GO:0016830 IDA carbon-carbon lyase activity
GO:0019385 IEA methanogenesis, from acetate
GO:0030976 IDA:IEA thiamine pyrophosphate binding
GO:0042802 IPI identical protein binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048037 IDA cofactor binding
GO:0051259 IDA protein oligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000127204 Hacl1-005 protein_coding Mus_musculus 0 1722
ENSMUST00000022437 Hacl1-001 protein_coding Mus_musculus 0 1485
ENSMUST00000156431 Hacl1-002 nonsense_mediated_decay Mus_musculus 0 1465
ENSMUST00000165955 Hacl1-012 nonsense_mediated_decay Mus_musculus 0 1171
ENSMUST00000167175 Hacl1-014 nonsense_mediated_decay Mus_musculus 0 1136
ENSMUST00000171414 Hacl1-013 nonsense_mediated_decay Mus_musculus 0 822
ENSMUST00000167066 Hacl1-011 protein_coding Mus_musculus 0 643
ENSMUST00000140078 Hacl1-003 processed_transcript Mus_musculus 0 333
ENSMUST00000155210 Hacl1-007 retained_intron Mus_musculus 0 276
ENSMUST00000156189 Hacl1-008 retained_intron Mus_musculus 0 268
ENSMUST00000139501 Hacl1-010 processed_transcript Mus_musculus 0 239
ENSMUST00000134626 Hacl1-004 nonsense_mediated_decay Mus_musculus 0 226
ENSMUST00000135751 Hacl1-009 retained_intron Mus_musculus 1.4013e-45 189

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