C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor Y, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456393 NFYC-017 ENSG00000066136 9606 + 1:40691743-40771601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000456393
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000456393 5.819±0.00 5.121±0.00 8.533±0.00 3.852±0.00 3.028±0.00 5.033±0.00 5.825±0.00 1.940±0.00 11.292±0.00 6.385±0.55 4.003±0.00 7.321±1.32

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA:IEA DNA binding
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006457 TAS protein folding
GO:0016602 IEA:IDA CCAAT-binding factor complex
GO:0043565 IEA sequence-specific DNA binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043429 Nfyc-001 protein_coding Mus_musculus 0 1927
ENSMUST00000120779 Nfyc-003 protein_coding Mus_musculus 0 1810
ENSMUST00000118902 Nfyc-002 protein_coding Mus_musculus 0 1810
ENSMUST00000097906 Nfyc-201 protein_coding Mus_musculus 0 1437
ENSMUST00000101625 Gm9144-201 pseudogene Mus_musculus 0 1349
ENSMUST00000127030 Nfyc-008 processed_transcript Mus_musculus 0 640
ENSMUST00000145029 Nfyc-009 processed_transcript Mus_musculus 0 612
ENSMUST00000134979 Nfyc-006 protein_coding Mus_musculus 0 560
ENSMUST00000136236 Nfyc-005 protein_coding Mus_musculus 0 379
ENSMUST00000148081 Nfyc-007 processed_transcript Mus_musculus 0 337

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