C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457742 MSH5-001 ENSG00000230293 9606 + CHR_HSCHR6_MHC_DBB_CTG1:31722173-31744857 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000795 IBA synaptonemal complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006200 IBA ATP catabolic process
GO:0006298 IEA mismatch repair
GO:0007131 IBA reciprocal meiotic recombination
GO:0008094 IBA DNA-dependent ATPase activity
GO:0030983 IBA:IEA mismatched DNA binding
GO:0045143 IBA homologous chromosome segregation
GO:0051026 IBA chiasma assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097338 Msh5-008 protein_coding Mus_musculus 0 2854
ENSMUST00000007250 Msh5-001 protein_coding Mus_musculus 0 2854
ENSMUST00000174603 Msh5-007 nonsense_mediated_decay Mus_musculus 0 2789
ENSMUST00000172536 Msh5-005 nonsense_mediated_decay Mus_musculus 0 2084
ENSMUST00000174026 Msh5-003 nonsense_mediated_decay Mus_musculus 0 1234
ENSMUST00000165329 Msh5-002 retained_intron Mus_musculus 0 701
ENSMUST00000174556 Msh5-004 nonsense_mediated_decay Mus_musculus 0 649
ENSMUST00000174741 Msh5-012 retained_intron Mus_musculus 0 647

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