C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 5 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174556 Msh5-004 ENSMUSG00000007035 10090 - 17:35037093-35046745 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverLungMuscleOvaryPlacentaENSMUST00000174556
Transcript ID Adrenal Brain Breast Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000174556 0.110±0.00 0.260±0.03 0.251±0.02 0.046±0.00 0.449±0.25 0.428±0.10 0.027±0.00 0.516±0.00 0.038±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000795 IDA synaptonemal complex
GO:0006200 IBA ATP catabolic process
GO:0007127 IMP meiosis I
GO:0007129 IMP synapsis
GO:0007131 IBA reciprocal meiotic recombination
GO:0007292 IMP female gamete generation
GO:0008094 IBA DNA-dependent ATPase activity
GO:0030983 IBA mismatched DNA binding
GO:0045143 IBA homologous chromosome segregation
GO:0051026 IBA chiasma assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375703 MSH5-004 protein_coding Homo_sapiens 0 649
ENST00000375740 MSH5-005 protein_coding Homo_sapiens 0 531
ENST00000375750 MSH5-002 protein_coding Homo_sapiens 0 649
ENST00000375755 MSH5-001 protein_coding Homo_sapiens 0 649
ENST00000412070 MSH5-001 protein_coding Homo_sapiens 0 649
ENST00000412201 MSH5-011 protein_coding Homo_sapiens 0 230
ENST00000416549 MSH5-002 protein_coding Homo_sapiens 0 649
ENST00000416819 MSH5-004 protein_coding Homo_sapiens 0 649
ENST00000416964 MSH5-011 protein_coding Homo_sapiens 0 191
ENST00000419269 MSH5-004 protein_coding Homo_sapiens 0 649
ENST00000420729 MSH5-008 protein_coding Homo_sapiens 0 582
ENST00000420731 MSH5-004 protein_coding Homo_sapiens 0 649
ENST00000422658 MSH5-008 protein_coding Homo_sapiens 0 582
ENST00000423982 MSH5-021 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000424681 MSH5-009 protein_coding Homo_sapiens 0 191
ENST00000425344 MSH5-011 protein_coding Homo_sapiens 0 230
ENST00000425703 MSH5-008 protein_coding Homo_sapiens 0 582
ENST00000427298 MSH5-008 protein_coding Homo_sapiens 0 582
ENST00000427735 MSH5-002 protein_coding Homo_sapiens 0 649
ENST00000427968 MSH5-002 protein_coding Homo_sapiens 0 649
ENST00000430217 MSH5-008 protein_coding Homo_sapiens 0 582
ENST00000432714 MSH5-012 protein_coding Homo_sapiens 0 191
ENST00000435700 MSH5-004 protein_coding Homo_sapiens 0 649
ENST00000435942 MSH5-011 protein_coding Homo_sapiens 0 230
ENST00000436091 MSH5-002 protein_coding Homo_sapiens 0 649
ENST00000436192 MSH5-004 protein_coding Homo_sapiens 0 649
ENST00000436559 MSH5-005 protein_coding Homo_sapiens 0 531
ENST00000441395 MSH5-002 protein_coding Homo_sapiens 0 649
ENST00000441401 MSH5-001 protein_coding Homo_sapiens 0 649
ENST00000443040 MSH5-005 protein_coding Homo_sapiens 0 531
ENST00000443665 MSH5-011 protein_coding Homo_sapiens 0 230
ENST00000443906 MSH5-054 protein_coding Homo_sapiens 0 582
ENST00000445611 MSH5-008 protein_coding Homo_sapiens 0 582
ENST00000448617 MSH5-005 protein_coding Homo_sapiens 0 531
ENST00000450148 MSH5-011 protein_coding Homo_sapiens 0 230
ENST00000456839 MSH5-001 protein_coding Homo_sapiens 0 649
ENST00000457742 MSH5-001 protein_coding Homo_sapiens 0 649
ENST00000457917 MSH5-005 protein_coding Homo_sapiens 0 531
ENST00000458058 MSH5-001 protein_coding Homo_sapiens 0 649
ENST00000458144 MSH5-005 protein_coding Homo_sapiens 0 531
ENST00000460275 MSH5-010 processed_transcript Homo_sapiens 0 599
ENST00000461588 MSH5-013 processed_transcript Homo_sapiens 0 224
ENST00000462956 MSH5-012 retained_intron Homo_sapiens 0 244
ENST00000463094 MSH5-009 retained_intron Homo_sapiens 0 377
ENST00000463144 MSH5-010 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000464561 MSH5-009 retained_intron Homo_sapiens 0 377
ENST00000465615 MSH5-013 processed_transcript Homo_sapiens 0 224
ENST00000468136 MSH5-022 retained_intron Homo_sapiens 0 233
ENST00000468394 MSH5-009 retained_intron Homo_sapiens 0 377
ENST00000468602 MSH5-013 processed_transcript Homo_sapiens 0 224
ENST00000469644 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000470446 MSH5-012 retained_intron Homo_sapiens 0 244
ENST00000471718 MSH5-013 protein_coding Homo_sapiens 0 191
ENST00000473342 MSH5-010 processed_transcript Homo_sapiens 0 599
ENST00000475813 MSH5-012 retained_intron Homo_sapiens 0 244
ENST00000477402 MSH5-009 retained_intron Homo_sapiens 0 377
ENST00000477687 MSH5-010 processed_transcript Homo_sapiens 0 599
ENST00000478326 MSH5-010 processed_transcript Homo_sapiens 0 599
ENST00000478592 MSH5-013 processed_transcript Homo_sapiens 0 224
ENST00000480377 MSH5-010 protein_coding Homo_sapiens 0 191
ENST00000480850 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000480915 MSH5-003 processed_transcript Homo_sapiens 0 531
ENST00000482113 MSH5-009 retained_intron Homo_sapiens 0 377
ENST00000482280 MSH5-019 processed_transcript Homo_sapiens 0 649
ENST00000482326 MSH5-010 processed_transcript Homo_sapiens 0 599
ENST00000485795 MSH5-013 processed_transcript Homo_sapiens 0 224
ENST00000490125 MSH5-003 processed_transcript Homo_sapiens 0 531
ENST00000490771 MSH5-012 retained_intron Homo_sapiens 0 244
ENST00000492444 MSH5-009 retained_intron Homo_sapiens 0 377
ENST00000493662 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000497269 MSH5-012 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000583103 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 531

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