C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(rC) binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461554 PCBP4-002 ENSG00000090097 9606 - 3:51957458-51967445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000461554
Transcript ID Muscle
ENST00000461554 4.314±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0001 VISTA 3:51705330-52307529
CIL_0008NT CIL_0008NT_0001 VISTA 3:51738719-52342071

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA:NAS RNA binding
GO:0005737 IEA cytoplasm
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024260 Pcbp4-001 protein_coding Mus_musculus 0 2169
ENSMUST00000188396 Pcbp4-016 protein_coding Mus_musculus 0 880
ENSMUST00000185779 Pcbp4-005 protein_coding Mus_musculus 0 848
ENSMUST00000185507 Pcbp4-010 nonsense_mediated_decay Mus_musculus 0 763
ENSMUST00000190428 Pcbp4-013 protein_coding Mus_musculus 0 702
ENSMUST00000185874 Pcbp4-003 protein_coding Mus_musculus 0 531
ENSMUST00000190430 Pcbp4-008 protein_coding Mus_musculus 0 507
ENSMUST00000188448 Pcbp4-012 retained_intron Mus_musculus 0 333
ENSMUST00000189882 Pcbp4-015 retained_intron Mus_musculus 0 326
ENSMUST00000186519 Pcbp4-014 retained_intron Mus_musculus 0 231
ENSMUST00000187975 Pcbp4-006 processed_transcript Mus_musculus 1e-35 156
ENSMUST00000185854 Pcbp4-004 processed_transcript Mus_musculus 3e-21 108
ENSMUST00000164834 Gpr62-001 protein_coding Mus_musculus 0.000000000000004 88

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