C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Yip1 domain family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464950 YIPF1-001 ENSG00000058799 9606 - 1:53851719-53889733 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000464950
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000464950 4.441±0.00 1.698±0.36 2.538±0.00 2.043±0.00 3.380±0.00 12.210±0.00 2.668±0.00 4.563±2.36 12.122±6.18 4.235±2.83

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004540 IEA ribonuclease activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030133 IDA transport vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075693 Yipf1-001 protein_coding Mus_musculus 0 918
ENSMUST00000139527 Yipf1-004 protein_coding Mus_musculus 0 701
ENSMUST00000128284 Yipf1-009 protein_coding Mus_musculus 0 590
ENSMUST00000146829 Yipf1-011 processed_transcript Mus_musculus 0 542
ENSMUST00000137391 Yipf1-003 processed_transcript Mus_musculus 0 479
ENSMUST00000143106 Yipf1-010 processed_transcript Mus_musculus 0 339

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