C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: helicase-like transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465259 HLTF-002 ENSG00000071794 9606 - 3:149030127-149086522 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000465259
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000465259 0.876±0.00 1.744±0.36 1.684±0.52 1.607±0.00 0.865±0.00 1.606±0.00 0.836±0.59 0.133±0.02 1.510±0.27 0.443±0.00 7.529±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089F CIL_00089F_0001 VISTA 3:148699826-149301821
CIL_0004SQ CIL_0004SQ_0002 CGP 3:148991341-149086554

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016567 IEA protein ubiquitination
GO:0016568 IEA chromatin modification
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016874 IEA ligase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002502 Hltf-001 protein_coding Mus_musculus 0 3291
ENSMUST00000128127 Hltf-003 retained_intron Mus_musculus 0 2564
ENSMUST00000117616 Gm16421-001 processed_pseudogene Mus_musculus 0 1762
ENSMUST00000143005 Hltf-002 nonsense_mediated_decay Mus_musculus 0 1674
ENSMUST00000145853 Hltf-005 nonsense_mediated_decay Mus_musculus 0 1653
ENSMUST00000154233 Hltf-006 retained_intron Mus_musculus 0 440

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