C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sequestosome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000466342 SQSTM1-007 ENSG00000161011 9606 + 5:179823858-179833386 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLungOvaryPlacentaTestisENST00000466342
Transcript ID Breast Colon Lung Ovary Placenta Testis
ENST00000466342 222.147±0.00 196.625±0.00 409.928±0.00 330.445±0.00 159.122±36.28 129.939±18.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XE CIL_0000XE_0002 CGP 5:179797597-179838078
CIL_0000XF CIL_0000XF_0002 CGP 5:179806398-179862173

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102774 Sqstm1-001 protein_coding Mus_musculus 0 590
ENSMUST00000015981 Sqstm1-002 protein_coding Mus_musculus 0 590
ENSMUST00000143379 Sqstm1-004 protein_coding Mus_musculus 0 584
ENSMUST00000154805 Sqstm1-006 retained_intron Mus_musculus 0 241

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