C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sequestosome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015981 Sqstm1-002 ENSMUSG00000015837 10090 - 11:50199366-50210791 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000015981
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000015981 12.439±0.06 10.325±1.69 5.324±0.00 18.811±0.00 21.394±1.50 11.057±5.96 14.737±0.00 24.129±8.09 17.824±0.00 7.338±2.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000407 IDA pre-autophagosomal structure
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0002376 IEA immune system process
GO:0003712 TAS transcription cofactor activity
GO:0005080 ISS protein kinase C binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0005776 ISS autophagic vacuole
GO:0005783 IEA endoplasmic reticulum
GO:0006914 ISS autophagy
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0016235 IDA aggresome
GO:0016236 ISS macroautophagy
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle
GO:0042169 ISS SH2 domain binding
GO:0042802 IDA identical protein binding
GO:0043122 ISS regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0070530 IDA K63-linked polyubiquitin binding
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360718 SQSTM1-002 protein_coding Homo_sapiens 0 833
ENST00000389805 SQSTM1-001 protein_coding Homo_sapiens 0 1085
ENST00000422245 SQSTM1-003 protein_coding Homo_sapiens 0 523
ENST00000453046 SQSTM1-008 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000466342 SQSTM1-007 retained_intron Homo_sapiens 0 590
ENST00000485412 SQSTM1-006 retained_intron Homo_sapiens 0 388
ENST00000504627 SQSTM1-017 protein_coding Homo_sapiens 0 254
ENST00000508284 SQSTM1-016 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000510187 SQSTM1-013 protein_coding Homo_sapiens 0 970
ENST00000514093 SQSTM1-015 protein_coding Homo_sapiens 0 614
ENST00000522663 C5orf45-004 nonsense_mediated_decay Homo_sapiens 0 215

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