C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sequestosome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143379 Sqstm1-004 ENSMUSG00000015837 10090 - 11:50200611-50210765 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000407 IDA pre-autophagosomal structure
GO:0003712 TAS transcription cofactor activity
GO:0005515 IPI protein binding
GO:0008270 IEA zinc ion binding
GO:0016235 IDA aggresome
GO:0042802 IDA identical protein binding
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360718 SQSTM1-002 protein_coding Homo_sapiens 0 719
ENST00000389805 SQSTM1-001 protein_coding Homo_sapiens 0 970
ENST00000422245 SQSTM1-003 protein_coding Homo_sapiens 0 523
ENST00000453046 SQSTM1-008 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000466342 SQSTM1-007 retained_intron Homo_sapiens 0 584
ENST00000485412 SQSTM1-006 retained_intron Homo_sapiens 0 388
ENST00000504627 SQSTM1-017 protein_coding Homo_sapiens 0 254
ENST00000508284 SQSTM1-016 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000510187 SQSTM1-013 protein_coding Homo_sapiens 0 1125
ENST00000514093 SQSTM1-015 protein_coding Homo_sapiens 0 614
ENST00000522663 C5orf45-004 nonsense_mediated_decay Homo_sapiens 1e-35 156

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