C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor Dp-2 (E2F dimerization partner 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467072 TFDP2-004 ENSG00000114126 9606 - 3:141952481-142149532 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverENST00000467072
Transcript ID Brain Colon Kidney Liver
ENST00000467072 2.856±0.00 2.413±0.00 3.760±0.00 4.359±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I1 CIL_0008I1_0001 VISTA 3:141560621-142161968
CIL_00052D CIL_00052D_0002 CGP 3:141876124-142000353

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 IEA:TAS mitotic cell cycle
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003712 IEA transcription cofactor activity
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0006351 IEA:TAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008134 IEA:IPI transcription factor binding
GO:0010467 TAS gene expression
GO:0019904 IPI protein domain specific binding
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185644 Tfdp2-008 protein_coding Mus_musculus 0 1869
ENSMUST00000165768 Tfdp2-006 protein_coding Mus_musculus 0 1783
ENSMUST00000034982 Tfdp2-002 protein_coding Mus_musculus 0 1762
ENSMUST00000188750 Tfdp2-013 protein_coding Mus_musculus 0 1748
ENSMUST00000179416 Tfdp2-003 protein_coding Mus_musculus 0 1729
ENSMUST00000179065 Tfdp2-005 protein_coding Mus_musculus 0 1620
ENSMUST00000189606 Tfdp2-012 protein_coding Mus_musculus 0 1400
ENSMUST00000165120 Tfdp2-001 protein_coding Mus_musculus 0 1400
ENSMUST00000188008 Tfdp2-007 protein_coding Mus_musculus 0 1395
ENSMUST00000186609 Tfdp2-009 protein_coding Mus_musculus 0 839
ENSMUST00000188829 Tfdp2-015 protein_coding Mus_musculus 0 632
ENSMUST00000191133 Tfdp2-010 protein_coding Mus_musculus 0 326
ENSMUST00000190104 Tfdp2-011 protein_coding Mus_musculus 0 292
ENSMUST00000190709 Tfdp2-014 processed_transcript Mus_musculus 0 241
ENSMUST00000190689 Tfdp2-017 retained_intron Mus_musculus 0 222
ENSMUST00000191390 Tfdp2-016 retained_intron Mus_musculus 0.0000000000006 81

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