C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: helicase with zinc finger 2, transcriptional coactivator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467148 HELZ2-003 ENSG00000130589 9606 - 20:63559202-63572455 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000467148
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000467148 1.873±0.00 1.286±0.00 0.080±0.00 0.312±0.22 1.161±0.43 0.619±0.02 0.413±0.00 0.635±0.00 0.220±0.14 0.558±0.00 2.216±0.22 1.036±0.21 0.310±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012G CIL_00012G_0001 CGP 20:63547891-63574239
CIL_00012X CIL_00012X_0001 CGP 20:63558086-63627041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016020 IDA membrane
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108831 Helz2-201 protein_coding Mus_musculus 0 1855
ENSMUST00000121484 Helz2-001 protein_coding Mus_musculus 0 1855
ENSMUST00000094203 Helz2-003 protein_coding Mus_musculus 0 1855
ENSMUST00000155049 Helz2-002 retained_intron Mus_musculus 0 1042
ENSMUST00000149417 Helz2-004 retained_intron Mus_musculus 0 279

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