C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468161 RPL7P1-001 ENSG00000214485 9606 + 5:150094302-150095048 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000468161
Transcript ID Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000468161 0.280±0.00 0.719±0.00 0.222±0.00 3.743±0.00 0.836±0.79 1.302±1.15 1.572±1.48 2.076±0.00 1.985±2.93 0.080±0.02 0.079±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058437 Rpl7-001 protein_coding Mus_musculus 0 898
ENSMUST00000119853 Gm12174-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000027054 Gm5045-201 processed_pseudogene Mus_musculus 0 859
ENSMUST00000118173 Gm6274-001 processed_pseudogene Mus_musculus 0 821
ENSMUST00000118692 Gm12090-001 processed_pseudogene Mus_musculus 0 719
ENSMUST00000118553 Gm8534-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000122189 Gm5392-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000148424 1700073E17Rik-001 transcribed_processed_pseudogene Mus_musculus 0 649
ENSMUST00000152419 1700073E17Rik-002 processed_transcript Mus_musculus 0 649
ENSMUST00000117062 Gm15159-001 processed_pseudogene Mus_musculus 0 590
ENSMUST00000141217 Rpl7-002 retained_intron Mus_musculus 0 569
ENSMUST00000136180 1700073E17Rik-004 processed_transcript Mus_musculus 0 534
ENSMUST00000151017 Rpl7-005 retained_intron Mus_musculus 0 267
ENSMUST00000140597 Rpl7-006 processed_transcript Mus_musculus 0 267

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