C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor associated protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469141 THRAP3-002 ENSG00000054118 9606 + 1:36224432-36304148 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000469141
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000469141 6.763±0.00 11.422±0.00 3.865±0.00 1.983±0.00 2.902±1.69 2.304±0.00 5.618±0.00 3.136±0.00 4.618±2.93 10.012±0.00 9.475±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JI CIL_0004JI_0002 CGP 1:36155579-36305357

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000381 IMP regulation of alternative mRNA splicing, via spliceosome
GO:0000956 IDA nuclear-transcribed mRNA catabolic process
GO:0001104 IDA RNA polymerase II transcription cofactor activity
GO:0003712 IDA transcription cofactor activity
GO:0003713 IDA transcription coactivator activity
GO:0004872 IDA receptor activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016592 IDA mediator complex
GO:0030374 NAS ligand-dependent nuclear receptor transcription coactivator activity
GO:0030518 IDA intracellular steroid hormone receptor signaling pathway
GO:0030521 IDA androgen receptor signaling pathway
GO:0035145 IDA exon-exon junction complex
GO:0042809 NAS vitamin D receptor binding
GO:0044822 IDA poly(A) RNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046966 IDA thyroid hormone receptor binding
GO:0048026 IMP positive regulation of mRNA splicing, via spliceosome
GO:0048255 IMP mRNA stabilization
GO:0051219 IDA phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080919 Thrap3-001 protein_coding Mus_musculus 0 3602
ENSMUST00000106142 Thrap3-004 protein_coding Mus_musculus 0 2573
ENSMUST00000119454 Gm15204-001 processed_pseudogene Mus_musculus 0 2497
ENSMUST00000121016 Gm5898-001 processed_pseudogene Mus_musculus 0 2351
ENSMUST00000151728 Thrap3-003 retained_intron Mus_musculus 0 1386
ENSMUST00000175985 Gm20706-001 processed_pseudogene Mus_musculus 0 1275
ENSMUST00000140390 Thrap3-002 processed_transcript Mus_musculus 0 761
ENSMUST00000163176 Thrap3-014 nonsense_mediated_decay Mus_musculus 0 496
ENSMUST00000123008 Thrap3-010 nonsense_mediated_decay Mus_musculus 0 357
ENSMUST00000163306 Thrap3-017 protein_coding Mus_musculus 0 351
ENSMUST00000136157 Thrap3-007 protein_coding Mus_musculus 0 272
ENSMUST00000169855 Thrap3-016 processed_transcript Mus_musculus 0 265
ENSMUST00000169403 Thrap3-018 protein_coding Mus_musculus 0 255
ENSMUST00000168568 Thrap3-012 retained_intron Mus_musculus 0 228
ENSMUST00000130477 Thrap3-009 retained_intron Mus_musculus 0 228
ENSMUST00000163459 Thrap3-015 protein_coding Mus_musculus 3e-37 161
ENSMUST00000130334 Thrap3-006 protein_coding Mus_musculus 1e-31 143
ENSMUST00000142125 Thrap3-005 protein_coding Mus_musculus 6e-30 137
ENSMUST00000106141 Thrap3-013 protein_coding Mus_musculus 3e-28 132

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