C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fat mass and obesity associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471389 FTO-001 ENSG00000140718 9606 + 16:53703963-54121941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000471389
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000471389 0.807±0.00 0.595±0.00 1.041±0.00 2.199±0.34 1.204±0.33 0.568±0.00 0.905±0.00 0.727±0.04 0.403±0.18 1.473±0.59 0.720±0.04 1.086±0.54 0.676±0.27 0.625±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0007PV CIL_0007PV_0001 VISTA 16:53229142-53830543
CIL_0008IZ CIL_0008IZ_0001 VISTA 16:53244122-53845073
CIL_0007S1 CIL_0007S1_0001 VISTA 16:53392404-53993644
CIL_0007S0 CIL_0007S0_0001 VISTA 16:53426386-54027245
CIL_0007SA CIL_0007SA_0001 VISTA 16:53595301-54195912
CIL_0005OE CIL_0005OE_0001 CGP 16:53597683-54121941
CIL_0007X2 CIL_0007X2_0001 VISTA 16:53614289-54215934
CIL_0007X0 CIL_0007X0_0001 VISTA 16:53652718-54254281
CIL_0007WZ CIL_0007WZ_0001 VISTA 16:53660146-54262031
CIL_0000UO CIL_0000UO_0001 CGP 16:53703963-54286763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001659 IEA temperature homeostasis
GO:0005634 ISS nucleus
GO:0006307 IDA DNA dealkylation involved in DNA repair
GO:0008198 IDA ferrous iron binding
GO:0010883 IEA regulation of lipid storage
GO:0016607 IDA nuclear speck
GO:0035515 IDA oxidative RNA demethylase activity
GO:0035516 IDA oxidative DNA demethylase activity
GO:0035552 IDA oxidative single-stranded DNA demethylation
GO:0035553 IDA oxidative single-stranded RNA demethylation
GO:0040014 IEA regulation of multicellular organism growth
GO:0042245 IDA RNA repair
GO:0043734 IDA DNA-N1-methyladenine dioxygenase activity
GO:0044065 IEA regulation of respiratory system process
GO:0060612 IEA adipose tissue development
GO:0070350 IEA regulation of white fat cell proliferation
GO:0070989 IDA oxidative demethylation
GO:0080111 IDA DNA demethylation

Homologs

No Homologs available.

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