C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger CCCH-type, antiviral 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471652 ZC3HAV1-003 ENSG00000105939 9606 - 7:139060338-139109719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLiverLungMuscleENST00000471652
Transcript ID Bladder Breast Colon Heart Liver Lung Muscle
ENST00000471652 3.837±0.00 3.810±0.00 2.371±0.00 0.417±0.00 3.990±0.00 5.936±0.00 0.490±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003950 IEA NAD+ ADP-ribosyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0008152 IEA metabolic process
GO:0009615 IDA response to virus
GO:0032727 IDA positive regulation of interferon-alpha production
GO:0032728 IDA positive regulation of interferon-beta production
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044822 IDA poly(A) RNA binding
GO:0045071 IDA negative regulation of viral genome replication
GO:0045087 IEA innate immune response
GO:0046872 IEA metal ion binding
GO:0051607 IEA defense response to virus
GO:0061014 IDA positive regulation of mRNA catabolic process
GO:1900246 IMP positive regulation of RIG-I signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114898 Zc3hav1-003 protein_coding Mus_musculus 0 599
ENSMUST00000031850 Zc3hav1-002 protein_coding Mus_musculus 0 599
ENSMUST00000114900 Zc3hav1-004 protein_coding Mus_musculus 0 580
ENSMUST00000143702 Zc3hav1-001 processed_transcript Mus_musculus 0 580
ENSMUST00000023491 Lrch3-001 protein_coding Mus_musculus 0.0002 53

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