C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeats and calponin homology (CH) domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023491 Lrch3-001 ENSMUSG00000022801 10090 + 16:32914100-33015647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000023491
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000023491 8.023±5.05 9.936±1.08 11.305±1.30 10.037±4.09 4.942±1.51 2.735±0.94 2.046±0.44 2.616±1.05 3.294±2.12 1.883±0.73 6.373±2.70 6.636±4.12 4.826±1.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C7 CIL_0006C7_0002 CGP 16:32877500-33015647
CIL_0006C8 CIL_0006C8_0002 CGP 16:32914100-33056218

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247815 HELB-001 protein_coding Homo_sapiens 0.0008 53
ENST00000334859 LRCH3-004 protein_coding Homo_sapiens 0 2242
ENST00000414675 LRCH3-003 protein_coding Homo_sapiens 0 1406
ENST00000425562 LRCH3-006 protein_coding Homo_sapiens 0 2455
ENST00000435930 RABL6-004 protein_coding Homo_sapiens 0.00006 55
ENST00000438796 LRCH3-001 protein_coding Homo_sapiens 0 2370
ENST00000440692 RPS24-202 protein_coding Homo_sapiens 0.00005 55
ENST00000441090 LRCH3-002 protein_coding Homo_sapiens 0 1031
ENST00000443727 LRCH3-011 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000452660 LRCH3-015 protein_coding Homo_sapiens 0 241
ENST00000458685 NOS2P3-002 processed_transcript Homo_sapiens 0.0002 53
ENST00000460845 ZC3HAV1-004 protein_coding Homo_sapiens 0.0001 53
ENST00000461674 LRCH3-014 retained_intron Homo_sapiens 0 479
ENST00000471652 ZC3HAV1-003 protein_coding Homo_sapiens 0.0002 53
ENST00000480132 ZHX1-007 processed_transcript Homo_sapiens 0.00003 53
ENST00000483442 LRCH3-019 retained_intron Homo_sapiens 0 484
ENST00000492930 MAP3K7CL-007 processed_transcript Homo_sapiens 0.00001 55
ENST00000494069 LRCH3-013 retained_intron Homo_sapiens 0 359

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