C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 1 pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471997 PABPC1P2-001 ENSG00000198526 9606 + 2:146587506-146589310 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungTestisENST00000471997
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Testis
ENST00000471997 0.022±0.00 0.008±0.00 0.037±0.00 0.060±0.02 0.007±0.00 0.013±0.00 2.030±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GY CIL_0007GY_0001 CGP 2:144388001-147930826
CIL_0007L9 CIL_0007L9_0004 UCNEbase 2:145198080-146951268
CIL_0008JN CIL_0008JN_0001 VISTA 2:146076402-146677183
CIL_00098I CIL_00098I_0001 VISTA 2:146114436-146716234
CIL_00081T CIL_00081T_0001 VISTA 2:146202973-146803848
CIL_0008IR CIL_0008IR_0001 VISTA 2:146231830-146833100
CIL_0008OQ CIL_0008OQ_0001 VISTA 2:146276205-146877397

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001809 Pabpc1-001 protein_coding Mus_musculus 0 1218
ENSMUST00000156793 Pabpc1-006 processed_transcript Mus_musculus 0 802

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