C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001809 Pabpc1-001 ENSMUSG00000022283 10090 - 15:36595661-36608973 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001809
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001809 59.714±31.59 45.678±22.28 65.448±17.59 44.343±35.53 90.716±57.23 90.350±49.61 19.888±14.87 29.733±18.32 70.885±66.39 45.749±14.15 20.550±1.72 118.968±134.31 249.371±273.95 404.016±434.23

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008143 ISS poly(A) binding
GO:0008266 ISO poly(U) RNA binding
GO:0008380 IEA RNA splicing
GO:0010494 ISS cytoplasmic stress granule
GO:0030529 ISS ribonucleoprotein complex
GO:0031047 IMP gene silencing by RNA
GO:0060213 IMP positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 IMP positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000623 ISS negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281589 PABPC3-001 protein_coding Homo_sapiens 0 3068
ENST00000318607 PABPC1-001 protein_coding Homo_sapiens 0 3895
ENST00000357585 SSTR2-001 protein_coding Homo_sapiens 0 351
ENST00000403786 AC019129.1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000464731 PABPC1P10-001 processed_pseudogene Homo_sapiens 0 455
ENST00000469174 PABPC1P3-001 processed_pseudogene Homo_sapiens 0 621
ENST00000471997 PABPC1P2-001 processed_pseudogene Homo_sapiens 0 1218
ENST00000506347 PABPC1P1-001 processed_pseudogene Homo_sapiens 0 793
ENST00000510152 RP11-333E13.2-001 processed_pseudogene Homo_sapiens 0 272
ENST00000517403 PABPC1-007 protein_coding Homo_sapiens 0 756
ENST00000517921 PABPC1-010 retained_intron Homo_sapiens 0 652
ENST00000517990 PABPC1-025 protein_coding Homo_sapiens 0 401
ENST00000518196 PABPC1-020 protein_coding Homo_sapiens 0 545
ENST00000518293 PABPC1-021 protein_coding Homo_sapiens 0 196
ENST00000518716 PABPC1-022 retained_intron Homo_sapiens 0 957
ENST00000519004 PABPC1-002 protein_coding Homo_sapiens 0 3192
ENST00000519100 PABPC1-012 protein_coding Homo_sapiens 0 1269
ENST00000519363 PABPC1-019 protein_coding Homo_sapiens 0 401
ENST00000519596 PABPC1-013 processed_transcript Homo_sapiens 0 1142
ENST00000519622 PABPC1-024 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000519848 PABPC1-023 retained_intron Homo_sapiens 0 736
ENST00000520142 PABPC1-008 protein_coding Homo_sapiens 0 652
ENST00000520804 PABPC1-018 protein_coding Homo_sapiens 0 431
ENST00000520868 PABPC1-006 protein_coding Homo_sapiens 0 1362
ENST00000521067 PABPC1-016 protein_coding Homo_sapiens 0 366
ENST00000521865 PABPC1-015 protein_coding Homo_sapiens 0 704
ENST00000522387 PABPC1-003 protein_coding Homo_sapiens 0 2669
ENST00000522658 PABPC1-005 protein_coding Homo_sapiens 0 852
ENST00000522720 PABPC1-017 protein_coding Homo_sapiens 0 593
ENST00000523555 PABPC1-009 protein_coding Homo_sapiens 0 448
ENST00000523636 PABPC1-014 nonsense_mediated_decay Homo_sapiens 0 665
ENST00000539977 PABPC1P4-001 processed_pseudogene Homo_sapiens 0 2466
ENST00000610907 PABPC1-201 protein_coding Homo_sapiens 0 2021

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