C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472045 IRF1-006 ENSG00000125347 9606 - 5:132483085-132489032 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000472045
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000472045 1.403±0.00 0.246±0.00 0.912±0.09 0.694±0.16 0.181±0.00 0.618±0.00 0.746±0.00 1.062±0.00 0.272±0.00 1.099±0.16 0.304±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093D CIL_00093D_0001 VISTA 5:131965137-132566411
CIL_0007RF CIL_0007RF_0001 VISTA 5:131967147-132570227

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019043 Irf1-002 protein_coding Mus_musculus 0 399
ENSMUST00000108920 Irf1-001 protein_coding Mus_musculus 0 399
ENSMUST00000133291 Irf1-006 protein_coding Mus_musculus 0 385
ENSMUST00000123376 Irf1-005 protein_coding Mus_musculus 0 385
ENSMUST00000108922 Irf1-008 protein_coding Mus_musculus 0 385
ENSMUST00000140866 Irf1-010 protein_coding Mus_musculus 0 385
ENSMUST00000170390 Gm17334-201 protein_coding Mus_musculus 1e-38 167

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