C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: presenilin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472139 PSEN2-006 ENSG00000143801 9606 + 1:226884623-226895691 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungOvaryENST00000472139
Transcript ID Brain Breast Colon Lung Ovary
ENST00000472139 4.912±0.00 1.173±0.00 1.129±0.00 1.052±0.00 4.428±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CY CIL_0008CY_0001 VISTA 1:226526998-227129223
CIL_000985 CIL_000985_0001 VISTA 1:226618699-227222072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0004190 IEA aspartic-type endopeptidase activity
GO:0005789 IEA endoplasmic reticulum membrane
GO:0006508 IEA proteolysis
GO:0016021 IEA integral component of membrane
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111105 Psen2-003 protein_coding Mus_musculus 0 1360
ENSMUST00000010753 Psen2-002 protein_coding Mus_musculus 0 1360
ENSMUST00000111108 Psen2-001 protein_coding Mus_musculus 0 1360
ENSMUST00000111106 Psen2-005 protein_coding Mus_musculus 0 1360
ENSMUST00000111104 Psen2-004 protein_coding Mus_musculus 0 1339
ENSMUST00000149590 Psen2-007 retained_intron Mus_musculus 0 725
ENSMUST00000130711 Psen2-009 processed_transcript Mus_musculus 0 636
ENSMUST00000130029 Psen2-011 processed_transcript Mus_musculus 0 521
ENSMUST00000136291 Psen2-010 processed_transcript Mus_musculus 0 503
ENSMUST00000128223 Psen2-008 retained_intron Mus_musculus 0 342

Loading