C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA fragmentation factor, 45kDa, alpha polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476658 DFFA-003 ENSG00000160049 9606 - 1:10461643-10472479 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyOvaryPlacentaTestisENST00000476658
Transcript ID Kidney Ovary Placenta Testis
ENST00000476658 3.470±0.00 32.327±0.00 15.237±0.00 10.097±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IM CIL_0008IM_0001 VISTA 1:10233066-10834152
CIL_0007WE CIL_0007WE_0001 VISTA 1:10372013-10973061
CIL_00085P CIL_00085P_0001 VISTA 1:10397607-10998574
CIL_00082Y CIL_00082Y_0001 VISTA 1:10421182-11021687
CIL_0008S2 CIL_0008S2_0001 VISTA 1:10435049-11039184
CIL_00019O CIL_00019O_0002 CGP 1:10456522-10630758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030816 Dffa-001 protein_coding Mus_musculus 0 449
ENSMUST00000103216 Dffa-002 protein_coding Mus_musculus 0 449
ENSMUST00000153781 Dffa-003 processed_transcript Mus_musculus 0 191

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