C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA fragmentation factor, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030816 Dffa-001 ENSMUSG00000028974 10090 + 4:149104146-149120647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030816
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030816 5.113±1.47 3.886±1.39 7.511±0.75 6.463±1.96 7.681±3.04 6.728±1.66 4.899±2.69 4.666±1.16 5.825±1.80 4.354±1.12 8.266±1.08 4.394±1.29 10.380±2.94 1.508±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659
CIL_00085P CIL_00085P_0002 VISTA 4:148597228-149198219
CIL_0007WE CIL_0007WE_0002 VISTA 4:148621504-149222572
CIL_0008IM CIL_0008IM_0002 VISTA 4:148744049-149345133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IBA nuclear chromatin
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0043065 IMP positive regulation of apoptotic process
GO:0070242 IMP thymocyte apoptotic process
GO:1900118 IBA negative regulation of execution phase of apoptosis
GO:1902511 IMP negative regulation of apoptotic DNA fragmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377036 DFFA-002 protein_coding Homo_sapiens 0 728
ENST00000377038 DFFA-001 protein_coding Homo_sapiens 0 832
ENST00000476658 DFFA-003 nonsense_mediated_decay Homo_sapiens 0 449

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