C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 9 open reading frame 85
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479413 C9orf85-001 ENSG00000155621 9606 + 9:71911510-71973152 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungOvaryPlacentaTestisENST00000479413
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000479413 1.408±0.00 0.873±0.00 0.509±0.00 0.445±0.00 0.941±0.00 0.772±0.00 0.852±0.00 11.070±9.44 6.002±0.00 10.284±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179553 1110059E24Rik-002 nonsense_mediated_decay Mus_musculus 0 342
ENSMUST00000178523 1110059E24Rik-005 protein_coding Mus_musculus 0 305
ENSMUST00000167588 Trim67-201 protein_coding Mus_musculus 0.000000000003 77
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000002 71
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000001 58
ENSMUST00000038562 Spsb1-001 protein_coding Mus_musculus 0.00006 53

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