C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline kinase beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000481673 CHKB-003 ENSG00000100288 9606 - 22:50578963-50582845 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungOvaryPlacentaENST00000481673
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Ovary Placenta
ENST00000481673 2.509±0.00 33.456±0.00 1.659±1.18 6.750±5.14 3.182±0.00 4.169±0.00 0.710±0.00 7.691±6.00 5.535±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002HR CIL_0002HR_0001 CGP 22:50568861-50582965

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023289 Chkb-001 protein_coding Mus_musculus 0 963
ENSMUST00000171140 Chkb-004 retained_intron Mus_musculus 0 835
ENSMUST00000170334 Chkb-003 retained_intron Mus_musculus 0 835
ENSMUST00000052315 Chkb-002 retained_intron Mus_musculus 0 830
ENSMUST00000166267 Chkb-007 retained_intron Mus_musculus 0 568
ENSMUST00000171666 Chkb-008 nonsense_mediated_decay Mus_musculus 0 472
ENSMUST00000170460 Chkb-009 protein_coding Mus_musculus 0 267
ENSMUST00000115278 Chkb-006 retained_intron Mus_musculus 0 220
ENSMUST00000112664 Chkb-010 processed_transcript Mus_musculus 0 220
ENSMUST00000165623 Chkb-005 retained_intron Mus_musculus 2e-37 161

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