C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: spermidine synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487300 SRM-007 ENSG00000116649 9606 - 1:11056702-11059686 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENST00000487300
Transcript ID Liver
ENST00000487300 0.393±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RU CIL_0008RU_0001 VISTA 1:10491513-11092116
CIL_0008JG CIL_0008JG_0001 VISTA 1:10565145-11165671
CIL_0008JY CIL_0008JY_0001 VISTA 1:10605072-11206087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0008152 IEA metabolic process
GO:0016740 IEA transferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152701 Srm-002 retained_intron Mus_musculus 0 375
ENSMUST00000006611 Srm-001 protein_coding Mus_musculus 0 350

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