C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: colony stimulating factor 1 receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504875 CSF1R-002 ENSG00000182578 9606 - 5:150053291-150086590 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000504875
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000504875 3.233±0.00 10.102±0.00 2.781±1.59 6.903±3.14 0.623±0.02 1.648±0.70 3.195±0.78 3.708±0.86 3.750±2.69 1.949±0.11 3.029±1.99 41.588±4.02 2.959±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004714 IEA transmembrane receptor protein tyrosine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006468 IEA protein phosphorylation
GO:0007169 IEA transmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020 IEA membrane
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0018108 IEA peptidyl-tyrosine phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115268 Csf1r-201 protein_coding Mus_musculus 0 1024
ENSMUST00000025523 Csf1r-001 protein_coding Mus_musculus 0 1024
ENSMUST00000115274 Pdgfrb-002 protein_coding Mus_musculus 2e-30 139
ENSMUST00000025522 Pdgfrb-001 protein_coding Mus_musculus 2e-30 139

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