C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet derived growth factor receptor, beta polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115274 Pdgfrb-002 ENSMUSG00000024620 10090 + 18:61045200-61085056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENSMUST00000115274
Transcript ID Colon
ENSMUST00000115274 1.197±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0002 VISTA 18:60604549-61207221
CIL_00079E CIL_00079E_0002 CGP 18:61018862-61085061

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001822 IMP kidney development
GO:0001894 IMP tissue homeostasis
GO:0004871 IDA signal transducer activity
GO:0005019 IEA platelet-derived growth factor beta-receptor activity
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0006807 IMP nitrogen compound metabolic process
GO:0007165 IDA signal transduction
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016301 IMP kinase activity
GO:0018108 IEA peptidyl-tyrosine phosphorylation
GO:0030325 IGI adrenal gland development
GO:0035791 IEA platelet-derived growth factor receptor-beta signaling pathway
GO:0048008 IMP platelet-derived growth factor receptor signaling pathway
GO:0048705 IMP skeletal system morphogenesis
GO:0048745 IMP smooth muscle tissue development
GO:0050730 IMP regulation of peptidyl-tyrosine phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261799 PDGFRB-001 protein_coding Homo_sapiens 0 3120
ENST00000286301 CSF1R-001 protein_coding Homo_sapiens 2e-30 139
ENST00000504875 CSF1R-002 nonsense_mediated_decay Homo_sapiens 2e-30 139
ENST00000515068 CSF1R-007 nonsense_mediated_decay Homo_sapiens 3e-31 139
ENST00000519575 PDGFRB-006 processed_transcript Homo_sapiens 0 719
ENST00000520579 PDGFRB-002 nonsense_mediated_decay Homo_sapiens 0 2671

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