C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired-like homeodomain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506438 PITX1-002 ENSG00000069011 9606 - 5:135028553-135034634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastLiverOvaryPlacentaTestisENST00000506438
Transcript ID Adipose Breast Liver Ovary Placenta Testis
ENST00000506438 0.298±0.00 1.540±0.00 2.145±0.00 3.851±2.72 1.414±0.46 0.639±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JT CIL_0007JT_0002 UCNEbase 5:134524545-135264654
CIL_0009AP CIL_0009AP_0001 VISTA 5:134719818-135321709
CIL_0005XU CIL_0005XU_0001 CGP 5:134967906-135034813

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA:IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021968 Pitx1-001 protein_coding Mus_musculus 0 1417
ENSMUST00000173618 Pitx1-002 protein_coding Mus_musculus 0 538

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