C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514090 GABRA2-011 ENSG00000151834 9606 - 4:46248444-46389381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainKidneyLungOvaryPlacentaENST00000514090
Transcript ID Adipose Brain Kidney Lung Ovary Placenta
ENST00000514090 0.244±0.00 4.154±0.00 0.645±0.00 0.023±0.00 0.029±0.00 0.020±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YX CIL_0002YX_0001 CGP 4:46035769-46475230
CIL_0002YU CIL_0002YU_0001 CGP 4:46248427-46909235

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001505 IMP regulation of neurotransmitter levels
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006836 IMP neurotransmitter transport
GO:0007165 IEA signal transduction
GO:0007214 IMP gamma-aminobutyric acid signaling pathway
GO:0007268 TAS synaptic transmission
GO:0008503 IMP benzodiazepine receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030285 IDA integral component of synaptic vesicle membrane
GO:0034220 IEA:TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0055085 TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000572 Gabra2-201 protein_coding Mus_musculus 0 2182

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