C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000572 Gabra2-201 ENSMUSG00000000560 10090 - 5:70961057-71095849 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000000572
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000000572 0.096±0.07 0.065±0.01 0.058±0.01 10.099±9.08 0.120±0.03 0.080±0.03 0.015±0.00 0.029±0.02 0.033±0.04 0.017±0.00 0.061±0.06 0.039±0.03 0.014±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YX CIL_0002YX_0002 CGP 5:70751047-71095849
CIL_0002YU CIL_0002YU_0002 CGP 5:70961057-71548205

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001505 IEA regulation of neurotransmitter levels
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0006836 IEA neurotransmitter transport
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0008503 IEA benzodiazepine receptor activity
GO:0030054 IEA cell junction
GO:0030285 IEA integral component of synaptic vesicle membrane
GO:0030424 IDA axon
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356504 GABRA2-002 protein_coding Homo_sapiens 0 2182
ENST00000381620 GABRA2-001 protein_coding Homo_sapiens 0 2241
ENST00000503806 GABRA2-008 protein_coding Homo_sapiens 0 643
ENST00000506961 GABRA2-007 protein_coding Homo_sapiens 0 586
ENST00000507069 GABRA2-013 protein_coding Homo_sapiens 0 1465
ENST00000507460 GABRA2-003 protein_coding Homo_sapiens 0 237
ENST00000509716 GABRA2-009 processed_transcript Homo_sapiens 0 193
ENST00000510233 GABRA2-010 nonsense_mediated_decay Homo_sapiens 0 924
ENST00000510861 GABRA2-005 protein_coding Homo_sapiens 0 2182
ENST00000513005 GABRA2-014 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000514090 GABRA2-011 protein_coding Homo_sapiens 0 2182
ENST00000514193 GABRA2-006 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000514236 GABRA2-012 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000515082 GABRA2-004 protein_coding Homo_sapiens 0 1465
ENST00000540012 GABRA2-201 protein_coding Homo_sapiens 0 1563

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