C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L26-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519239 RPL26L1-004 ENSG00000037241 9606 + 5:172959460-172969718 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainKidneyLiverOvaryPlacentaTestisENST00000519239
Transcript ID Adipose Adrenal Bladder Brain Kidney Liver Ovary Placenta Testis
ENST00000519239 0.871±0.00 1.959±0.00 0.389±0.00 1.548±0.07 4.486±0.00 3.268±2.53 7.906±8.32 10.571±8.06 45.328±38.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0001 VISTA 5:172471670-173074006
CIL_000915 CIL_000915_0001 VISTA 5:172905793-173506594

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0006412 IEA:TAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015934 IEA large ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057944 rpl26-001 protein_coding Danio_rerio 0 348
ENSMUST00000085379 Rpl26-ps2-201 processed_pseudogene Mus_musculus 0 337

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