C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520239 GS1-44D20.1-001 ENSG00000254332 9606 + 8:69129598-69130345 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000520239
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000520239 0.022±0.00 0.049±0.00 0.025±0.00 0.067±0.04 0.022±0.00 0.025±0.00 0.206±0.00 0.021±0.00 0.140±0.16 0.083±0.00 0.111±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SG CIL_0001SG_0002 CGP 8:68330722-69660915
CIL_00087Y CIL_00087Y_0001 VISTA 8:69097307-69699884

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003575 Tpm4-001 protein_coding Mus_musculus 0 791
ENSDART00000123125 tpm4a-203 protein_coding Danio_rerio 0 363
ENSDART00000009054 tpm4a-201 protein_coding Danio_rerio 0 326
ENSDART00000036075 tpm4a-202 protein_coding Danio_rerio 0 326
ENSDART00000138978 tpm4a-002 protein_coding Danio_rerio 0 326
ENSDART00000142717 tpm4a-001 protein_coding Danio_rerio 0 326

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