C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trichorhinophalangeal syndrome I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520276 TRPS1-006 ENSG00000104447 9606 - 8:115413922-115668007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungMuscleOvaryPlacentaTestisENST00000520276
Transcript ID Lung Muscle Ovary Placenta Testis
ENST00000520276 1.875±0.00 1.156±0.00 0.696±0.00 0.132±0.00 2.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RP CIL_0005RP_0001 CGP 8:112222928-115809673
CIL_00097I CIL_00097I_0001 VISTA 8:115118467-115720299
CIL_0005RQ CIL_0005RQ_0001 CGP 8:115408496-116766925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001501 TAS skeletal system development
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006607 TAS NLS-bearing protein import into nucleus
GO:0008270 IEA zinc ion binding
GO:0031063 IEA regulation of histone deacetylation
GO:0032330 ISS regulation of chondrocyte differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183757 Trps1-003 protein_coding Mus_musculus 0 5587
ENSMUST00000077935 Trps1-201 protein_coding Mus_musculus 0 5448
ENSMUST00000165201 Trps1-001 protein_coding Mus_musculus 0 5448
ENSMUST00000184458 Trps1-002 protein_coding Mus_musculus 0 4148
ENSMUST00000184885 Trps1-005 protein_coding Mus_musculus 0 2857
ENSMUST00000183997 Trps1-004 protein_coding Mus_musculus 0 2036
ENSMUST00000185183 Trps1-007 protein_coding Mus_musculus 0 1068

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